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Table 2 Physicochemical and pharmacokinetic properties of ART-THY hybrids, parental and control compounds

From: Computational approach towards the design of artemisinin–thymoquinone hybrids against main protease of SARS-COV-2

Compound

MW (g/mol)

N.RB

N.HBAs

N.HBDs

Physicochemical properties

Pharmacokinetics

TPSA at pH 7.4 (Å2)

Lipophilicity

Water solubility at pH 7.4

Absorption

Distribution

log P

log S

mol/L

HIA (%)

PCaco-2 (nm/s)

PPB (%)

BBB (Cbrain/Cblood)

Parental ligands

ART

282.33

0

5

0

53.99

1.68

− 2.69

0.0020

96.31

30.32

93.36

1.30

ARA

384.42

5

8

1

103.35

1.70

− 1.62

0.0238

83.94

13.21

90.61

0.01

THY

164.20

1

2

0

34.14

2.51

− 2.66

0.0021

99.28

23.03

100.00

1.78

Artemisinin–thymoquinone hybrids

T1

588.69

11

10

0

123.66

4.69

− 6.69

0.0076

97.00

21.18

93.30

0.02

T2

602.71

12

10

0

123.66

5.15

− 7.00

0.0037

97.52

24.18

94.30

0.03

T3

574.66

10

10

0

123.66

4.24

− 6.38

0.0002

96.42

22.11

92.79

0.02

T4

530.65

8

8

0

97.36

4.79

− 6.83

0.0001

99.10

36.05

93.54

0.07

T5

544.68

9

8

0

97.36

5.24

− 7.13

0.0225

99.30

40.17

94.56

0.06

T6

488.61

6

7

0

80.29

4.90

− 6.53

0.0005

99.12

46.47

96.20

0.06

T7

502.64

7

7

0

80.29

5.36

− 6.84

0.0775

99.12

49.14

98.43

0.09

Control-ligands

ANK

509.55

10

9

3

176.34

1.83

− 3.37

0.0004

46.52

17.57

87.45

0.04

AZT

748.996

7

13

5

182.48

2.45

− 3.33

0.0004

69.32

31.40

14.49

0.06

BRT

371.42

4

6

1

120.56

0.40

− 0.14

0.7179

93.54

3.08

78.87

0.00

CLQ

319.88

8

3

1

30.61

4.53

− 4.59

0.0095

98.05

56.61

92.53

7.73

RDS

602.585

14

9

4

203.55

1.71

− 3.18

0.0006

53.50

3.26

81.26

0.04

  1. AZT azithromycin, BRT baricitinib, RDS remdesivir, ANK anakinra, CLQ chloroquine, ART artemisin, ARA artemisin acid, THY thymoquinone