Table 1 Databases and software tools for GPCR–G protein modelling
Database/software | Description |
|---|---|
CHARMM-GUI | This is a web-based graphical user software that prepares biomolecular entities such as GPCRs and G proteins for dynamics/molecular simulations. http://www.charmm-gui.org/ |
Human gpDB | This is a database with information about 36 human G proteins, 99 human effectors and 713 GPCRs. http://www.bioinformatics.biol.uoa.gr/human_gpdb/ |
OMP | It is a database with information about the structural classification of membrane proteins, spatial positions in the lipid bilayer and intracellular localization. http://www.opm.phar.umich.edu/ |
PDB | A repository that contains experimental dataset of structures of biological macromolecules. http://www.resb.org/ |
gpPDB | This is a database that contains information about GPCRs, their effectors and known interactions. http://www.bioinformatics.biol.uoa.gr/gpDB/ |
GPCRdb | This database houses the structures, diagrams and web tools of GPCRs. http://www.gpcrdb.org/ |