Alias | Target Sequence (21nt target + 2nt overhang) | Target position in mRNA of Spike | RNA oligo sequences 21nt guide (5′ → 3′) 21nt passenger (5′ → 3′) | Functional siRNA selection: Ui-Tei Reynolds Amarzguioui | Seed duplex stability (Tm) | |
---|---|---|---|---|---|---|
Guide | Passenger | |||||
S1 | ATGTTTGTTTTTCTTGTTTTATT | 1–23 | UAAAACAAGAAAAACAAACAU GUUUGUUUUUCUUGUUUUAUU | U R A | 5.6 °C | 5.6 °C |
S2 | TGGATTTTTGGTACTACTTTAGA | 304–326 | UAAAGUAGUACCAAAAAUCCA GAUUUUUGGUACUACUUUAGA | U R A | 9.8 °C | − 3.3 °C |
S3 | CGCTACTAATGTTGTTATTAAAG | 360–382 | UUAAUAACAACAUUAGUAGCG CUACUAAUGUUGUUAUUAAAG | U R A | 1.4 °C | 6.3 °C |
S4 | GGGAATTTGTGTTTAAGAATATT | 554–576 | UAUUCUUAAACACAAAUUCCC GAAUUUGUGUUUAAGAAUAUU | U R A | 6.9 °C | 5.3 °C |
S5 | AAGAATATTGATGGTTATTTTAA | 568–590 | AAAAUAACCAUCAAUAUUCUU GAAUAUUGAUGGUUAUUUUAA | U R A | − 0.3 °C | − 1.8 °C |
S6 | GACTTTTCTATTAAAATATAATG | 810–832 | UUAUAUUUUAAUAGAAAAGUC CUUUUCUAUUAAAAUAUAAUG | U R A | − 8.0 °C | 7.1 °C |
S7 | TTCTATTAAAATATAATGAAAAT | 815–837 | UUUCAUUAUAUUUUAAUAGAA CUAUUAAAAUAUAAUGAAAAU | U R A | 8.9 °C | − 7.5 °C |
S8 | ATCTATCAAACTTCTAACTTTAG | 925–947 | AAAGUUAGAAGUUUGAUAGAU CUAUCAAACUUCUAACUUUAG | U R A | 9.8 °C | 8.9 °C |
S9 | TTGTTAGATTTCCTAATATTACA | 968–990 | UAAUAUUAGGAAAUCUAACAA GUUAGAUUUCCUAAUAUUACA | U R A | − 8.0 °C | 6.9 °C |
S10 | CCCTTTTGATGAAGTTTTTAACG | 999–1021 | UUAAAAACUUCAUCAAAAGGG CUUUUGAUGAAGUUUUUAACG | U R A | 0.0 °C | 7.4 °C |
S11 | CTGGAAATATTGCTGATTATAAT | 1235–1257 | UAUAAUCAGCAAUAUUUCCAG GGAAAUAUUGCUGAUUAUAAU | U R A | 8.7 °C | 1.8 °C |
S12 | GACCTAAAAAGTCTACTAATTTG | 1568–1590 | AAUUAGUAGACUUUUUAGGUC CCUAAAAAGUCUACUAAUUUG | U R A | 6.3 °C | − 3.8 °C |
S13 | GTCTACTAATTTGGTTAAAAACA | 1578–1600 | UUUUUAACCAAAUUAGUAGAC CUACUAAUUUGGUUAAAAACA | U R A | 0.0 °C | 6.3 °C |
S14 | TTGCAATATGGCAGTTTTTGTAC | 2251–2273 | ACAAAAACUGCCAUAUUGCAA GCAAUAUGGCAGUUUUUGUAC | U R A | 5.6 °C | 5.6 °C |
S15 | CAGTTTTTGTACACAATTAAAAC | 2262–2284 | UUUAAUUGUGUACAAAAACUG GUUUUUGUACACAAUUAAAAC | U R A | − 1.4 °C | 5.6 °C |
S16 | GTGCAATTTCAAGTGTTTTAAAT | 2903–2925 | UUAAAACACUUGAAAUUGCAC GCAAUUUCAAGUGUUUUAAAU | U R A | 7.2 °C | 7.4 °C |
S17 | TTGTAAACATTCAAAAAGAAATT | 3518–354 | UUUCUUUUUGAAUGUUUACAA GUAAACAUUCAAAAAGAAAUU | U R A | 5.5 °C | 6.9 °C |